Parsing XML with namespace in Python via ‘ElementTree’

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Parsing XML with namespace in Python via ‘ElementTree’

I have the following XML which I want to parse using Python’s ElementTree:

<rdf:RDF xml:base="http://dbpedia.org/ontology/"
    xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
    xmlns:owl="http://www.w3.org/2002/07/owl#"
    xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
    xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
    xmlns="http://dbpedia.org/ontology/">
    <owl:Class rdf:about="http://dbpedia.org/ontology/BasketballLeague">
        <rdfs:label xml:lang="en">basketball league</rdfs:label>
        <rdfs:comment xml:lang="en">
          a group of sports teams that compete against each other
          in Basketball
        </rdfs:comment>
    </owl:Class>
</rdf:RDF>

I want to find all owl:Class tags and then extract the value of all rdfs:label instances inside them. I am using the following code:

tree = ET.parse("filename")
root = tree.getroot()
root.findall('owl:Class')

Because of the namespace, I am getting the following error.

SyntaxError: prefix 'owl' not found in prefix map

I tried reading the document at http://effbot.org/zone/element-namespaces.htm but I am still not able to get this working since the above XML has multiple nested namespaces.

Kindly let me know how to change the code to find all the owl:Class tags.

Asked By: Sudar

||

Answer #1:

ElementTree is not too smart about namespaces. You need to give the .find(), findall() and iterfind() methods an explicit namespace dictionary. This is not documented very well:

namespaces = {'owl': 'http://www.w3.org/2002/07/owl#'} # add more as needed
root.findall('owl:Class', namespaces)

Prefixes are only looked up in the namespaces parameter you pass in. This means you can use any namespace prefix you like; the API splits off the owl: part, looks up the corresponding namespace URL in the namespaces dictionary, then changes the search to look for the XPath expression {http://www.w3.org/2002/07/owl}Class instead. You can use the same syntax yourself too of course:

root.findall('{http://www.w3.org/2002/07/owl#}Class')

If you can switch to the lxml library things are better; that library supports the same ElementTree API, but collects namespaces for you in a .nsmap attribute on elements.

Answered By: Martijn Pieters

Answer #2:

Here’s how to do this with lxml without having to hard-code the namespaces or scan the text for them (as Martijn Pieters mentions):

from lxml import etree
tree = etree.parse("filename")
root = tree.getroot()
root.findall('owl:Class', root.nsmap)

UPDATE:

5 years later I’m still running into variations of this issue. lxml helps as I showed above, but not in every case. The commenters may have a valid point regarding this technique when it comes merging documents, but I think most people are having difficulty simply searching documents.

Here’s another case and how I handled it:

<?xml version="1.0" ?><Tag1 xmlns="http://www.mynamespace.com/prefix">
<Tag2>content</Tag2></Tag1>

xmlns without a prefix means that unprefixed tags get this default namespace. This means when you search for Tag2, you need to include the namespace to find it. However, lxml creates an nsmap entry with None as the key, and I couldn’t find a way to search for it. So, I created a new namespace dictionary like this

namespaces = {}
# response uses a default namespace, and tags don't mention it
# create a new ns map using an identifier of our choice
for k,v in root.nsmap.iteritems():
    if not k:
        namespaces['myprefix'] = v
e = root.find('myprefix:Tag2', namespaces)
Answered By: Brad Dre

Answer #3:

Note: This is an answer useful for Python’s ElementTree standard library without using hardcoded namespaces.

To extract namespace’s prefixes and URI from XML data you can use ElementTree.iterparse function, parsing only namespace start events (start-ns):

>>> from io import StringIO
>>> from xml.etree import ElementTree
>>> my_schema = u'''<rdf:RDF xml_base="http://dbpedia.org/ontology/"
...     xmlns_rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
...     xmlns_owl="http://www.w3.org/2002/07/owl#"
...     xmlns_xsd="http://www.w3.org/2001/XMLSchema#"
...     xmlns_rdfs="http://www.w3.org/2000/01/rdf-schema#"
...     >
... 
...     <owl:Class rdf_about="http://dbpedia.org/ontology/BasketballLeague">
...         <rdfs:label xml_lang="en">basketball league</rdfs:label>
...         <rdfs:comment xml_lang="en">
...           a group of sports teams that compete against each other
...           in Basketball
...         </rdfs:comment>
...     </owl:Class>
... 
... </rdf:RDF>'''
>>> my_namespaces = dict([
...     node for _, node in ElementTree.iterparse(
...         StringIO(my_schema), events=['start-ns']
...     )
... ])
>>> from pprint import pprint
>>> pprint(my_namespaces)
{'': 'http://dbpedia.org/ontology/',
 'owl': 'http://www.w3.org/2002/07/owl#',
 'rdf': 'http://www.w3.org/1999/02/22-rdf-syntax-ns#',
 'rdfs': 'http://www.w3.org/2000/01/rdf-schema#',
 'xsd': 'http://www.w3.org/2001/XMLSchema#'}

Then the dictionary can be passed as argument to the search functions:

root.findall('owl:Class', my_namespaces)
Answered By: Davide Brunato

Answer #4:

To get the namespace in its namespace format, e.g. {myNameSpace}, you can do the following:

root = tree.getroot()
ns = re.match(r'{.*}', root.tag).group(0)

This way, you can use it later on in your code to find nodes, e.g using string interpolation (Python 3).

link = root.find(f"{ns}link")
Answered By: Bram Vanroy

Answer #5:

I’ve been using similar code to this and have found it’s always worth reading the documentation… as usual!

findall() will only find elements which are direct children of the current tag. So, not really ALL.

It might be worth your while trying to get your code working with the following, especially if you’re dealing with big and complex xml files so that that sub-sub-elements (etc.) are also included.
If you know yourself where elements are in your xml, then I suppose it’ll be fine! Just thought this was worth remembering.

root.iter()

ref: https://docs.python.org/3/library/xml.etree.elementtree.html#finding-interesting-elements
“Element.findall() finds only elements with a tag which are direct children of the current element. Element.find() finds the first child with a particular tag, and Element.text accesses the element’s text content. Element.get() accesses the element’s attributes:”

Answered By: MJM

Answer #6:

My solution is based on @Martijn Pieters’ comment:

register_namespace only influences serialisation, not search.

So the trick here is to use different dictionaries for serialization and for searching.

namespaces = {
    '': 'http://www.example.com/default-schema',
    'spec': 'http://www.example.com/specialized-schema',
}

Now, register all namespaces for parsing and writing:

for name, value in namespaces.iteritems():
    ET.register_namespace(name, value)

For searching (find(), findall(), iterfind()) we need a non-empty prefix. Pass these functions a modified dictionary (here I modify the original dictionary, but this must be made only after the namespaces are registered).

self.namespaces['default'] = self.namespaces['']

Now, the functions from the find() family can be used with the default prefix:

print root.find('default:myelem', namespaces)

but

tree.write(destination)

does not use any prefixes for elements in the default namespace.

Answered By: peter.slizik
The answers/resolutions are collected from stackoverflow, are licensed under cc by-sa 2.5 , cc by-sa 3.0 and cc by-sa 4.0 .

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